| Number | Authors | Titles |
| 24 | Qi Tian | MRCNN: A deep learning model for regression of genome-wide DNA methylation |
| 26 | Kishan K C | GNE: A deep learning framework for gene network inference by aggregating biological information |
| 29 | Rui Jiang | DeepHistone: a deep learning approach to predicting histone modifications |
| 31 | Wentign Liu | Fusing Gene Expression and Transitive Protein-Protein Interaction for Gene Regulatory Networks |
| 33 | Changlong Gu | FCMDAP: Using miRNA family and cluster information to improve the prediction accuracy of disease related miRNAs |
| 46 | Min Xu | Automatic Localization and Identification of Mitochondria in Cellular Electron Cryo-Tomography using Faster-RCNN |
| 49 | Lin Hou | Identification of trans-eQTLs using mediation analysis with multiple mediators |
| 62 | Inkyung Jung | A new class of super-enhancers associated with fast recovery of 3D chromatin loops |
| 87 | Shanshan Ren | GPU Accelerated Sequence Alignment with Traceback for GATK HaplotypeCaller |
| 108 | Aïda Ouangraoua | SplicedFamAlign: CDS-to-gene spliced alignment and identification of transcript orthology groups |
| 109 | Li Xia | Extending Liquid Association to Explore Mediated Co-varying Dynamics in Marine Microbial Community |
| 140 | Wei-Mou Zheng | Constructing optimal energy functions for protein structure prediction using reverse Monte Carlo sampling |
| 146 | Xuequn Shang | A fast and efficient count-based matrix factorization method for detecting cell types from single-cell RNAseq data |
| 150 | Pei Hao | Microbiota in the Apical Root Canal System of Tooth with Apical Perodontitis |
| 151 | Rex Asabor | An Algorithm to Predict Feature-Based Gene Equivalence Between Mouse Strains |
| 152 | Yao Lin and Kui Lin | Identification and classification of long noncoding RNAs in cucumis sativus |
| 153 | Shaista Hussain, Binh P. Nguyen, Mardiana Marzuki, Lin Shuping, Graham Wright and Amit Singhal | Identification and profiling of drug-induced cellular phenotypes in human monocytes using machine learning |
| 155 | Hsiao-Wei Wu and Chih-Hao Lu | Prediction of cancer related single amino acid variation by machine learning method |
| 157 | Ziwei Chen, Shaokun An, Xiangqi Bai, Fuzhou Gong, Liang Ma and Lin Wan | Topology data analysis to visualize and reconstruct complex trajectories of cell development for large-scale scRNA-seq data |
| 158 | Liang Ma | TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data |
| 159 | Hu Ying and Wang Ju | Pathway-based approaches for analysis of candidate genes associated with neuropsychiatric disorders |
| 160 | Ting Ma, Yiyi Jiang, Yuanhua Liu and Pei Hao | A survey on cellular RNA editing activity in response to HBV infections of human hepatocellular carcinoma patients |
| 161 | Xinrui Lin, Kui Lin, Ning Zhang and Erli Pang | The detection of positive selection signals in human populations |
| 162 | Ran Zhong and Xingpeng Jiang | Microbial Interaction Extraction based on Feature Vector and SVM |
| 163 | Xin Li a, Yufeng Wu | Detecting Circular RNA from High-throughput Sequence Data with De Bruijn Graph |
| 164 | Chuan Fu Yap, Simon Hubbard, Jean-Marc Schwartz | GRaPe 2.0: Accelerating the construction of kinetic models for cell metabolism |
| 165 | Yunqing Ren | Anti-TNF-α Treatment-related Pathways and Biomarkers Revealed by Transcriptome Analysis in Chinese Psoriasis Patients |
| 166 | Wenting Liu and Yilei Zhang | Enhanced knowledge generation of rate-changes in transcriptional regulation using ontology rules, sentence structure and deep neural networks |
| 167 | Shion Hosoda and Michiaki Hamada | A new model for predicting metagenomic functional profile from 16S rRNA gene amplicon sequencing data |
| 168 | Chien-Jung Huang and Yu-Chao Wang | Identification of the therapeutic targets for selective killing of HBV-positive hepatocytes |
| 170 | Xinhua Liu, Yuan Zhou and Qinghua Cui | A Comprehensive Comparison Study Between Genes Associated with Different Drug Sensitivity of Cancer Cells Based on Connectivity Map |
| 171 | Yaosen Min, Shang Liu , Xuefeng Cui | Learning Protein Structural Fingerprints under the Label-Free Supervision of Domain Knowledge |
| 177 | Quan Chen | Detecting virus-specific effects on post-infection temporal gene expression |